gff3d

GFF3 Record abstraction

This module provides a readable, writeable abstraction of GFF3 records.

For reading and writing from and to bgzip-compressed/tabix-indexed files, use dhtslib -- https://github.com/blachlylab/dhtslib

Modules

gff3record module gff3d.gff3record: Undocumented in source.
gtfrecord module gff3d.gtfrecord: Undocumented in source.

Public Imports

gff3d.gff3record public import gff3d.gff3record;: Undocumented in source.

gff3d.gtfrecord public import gff3d.gtfrecord;: Undocumented in source.

Meta

Source

See Source File

Authors

James S Blachly, MD <james.blachly@gmail.com>; Thomas Gregory <charles.gregory@osumc.edu>

License

MIT

Standards

http://gmod.org/wiki/GFF3

https://useast.ensembl.org/info/website/upload/gff3.html

https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md

http://www.sequenceontology.org/gff3.shtml

Date

Date: 2019-01-28

modules

gff3d